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I join Dr. Steven Salzberg’s and Dr. Mihaela Pertea’s lab as a CS Ph.D. student at the Johns Hopkins University.
We are releasing Han1, the first gapless, fully annotated Chinese Han genome. Check it out on bioRxiv!
We are releasing WGT, the first Wheeler Graph suite with the fastest recognition algorithm. It’s on bioRxiv now!
I am presenting Han1 at 2022 Biological Data Science! Here is the link to the poster and the video to my 1-min lightening talk
My paper WGT is accepted to RECOMB-Seq as a proceedings track paper and RECOMB as a poster. Great collaboration with langmead lab and Seshia lab. See you in İstanbul, Türkiye
Splam is accepted as a poster at MLCSB COSI, and Han1 is accepted as a highlight poster at HiTSeq COSI. Exciting to share our work at ISMB/ECCB 2023 in Lyon, France
The paper I coauthored, CHESS 3, decribing a new human gene catalog, is now published in Genome Biology!
I am presenting Splam at Genome Informatics. Check out v1.0.10 release. See you in Cold Spring Harbor, NY!
IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), Dec 2019
Kuan-Hao Chao, Y.W. Hsiao, Y.F. Lee, C.Y. Lee, L.C. Lai, M.H. Tsai, T.P. Lu, and E.Y. Chuang*PDF Cite Code Documentation Slides
Genome Biology and Evolution(GBE), Feb 2021
Kuan-Hao Chao*, Kirston Barton, Sarah Palmer, and Robert Lanfear*PDF Cite Code Documentation Poster
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure
bioRxiv, Dec 2022
Ales Varabyou, Markus J. Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Kuan-Hao Chao, Sukhwan Park, Jakob Heinz, Christopher Pockrandt, Alaina Shumate, Natalia Rincon, Daniela Puiu, Martin Steinegger, Steven L. Salzberg, Mihaela PerteaPDF Cite Code Documentation
G3: Genes, Genomes, Genetics, Jan 2023
Kuan-Hao Chao*, A.V. Zimin, M. Pertea, S.L. Salzberg*PDF Cite Code Documentation Poster
bioRxiv, May 2023
Ida Shinder*, Richard Hu, Hyun Joo Ji, Kuan-Hao Chao, Mihaela Pertea*PDF Cite Code Documentation
Briefings in Bioinformatics, Jun 2023
Yu-Hsin Chen†, Kuan-Hao Chao†, Jin Yung Wong, Chien-Fu Liu, Jun-Yi Leu*, Huai-Kuang Tsai*PDF Cite Code Documentation
iScience, Jul 2023
Kuan-Hao Chao*†, Pei-Wei Chen†, Sanjit A. Seshia, Ben Langmead*PDF Cite Code Documentation Poster
bioRxiv, Aug 2023
Kuan-Hao Chao*, Alan Mao, Steven L Salzberg, Mihaela Pertea*PDF Cite Code Documentation Poster