Steven Salzberg
Introduction
Han1: the first gapless, reference quality, fully-annotated Southern Chinese Han genome
Genome assembly / indexing at Center of Computational Biology, Johns Hopkins University, Baltimore, MD
Splam: an accurate deep learning-based splice site predictor
Transcriptome at Center of Computational Biology, Johns Hopkins University, Baltimore, MD
multiStringTie: a multi-sample transcriptome assembler
Transcriptome at Center of Computational Biology, Johns Hopkins University, Baltimore, MD
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure
Ales Varabyou*, Markus J. Sommer, Beril Erdogdu, Ida Shinder, Ilia Minkin, Kuan-Hao Chao, Sukhwan Park, Jakob Heinz, Christopher Pockrandt, Alaina Shumate, Natalia Rincon, Daniela Puiu, Martin Steinegger, Steven L. Salzberg*, Mihaela Pertea* (2022). CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure, Genome Biology,
The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual
Kuan-Hao Chao*, A.V. Zimin, M. Pertea, S.L. Salzberg* (2022). The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual, G3: Genes, Genomes, Genetics, https://doi.org/10.1093/g3journal/jkac321
Combining DNA and protein alignments to improve genome annotation with LiftOn
Kuan-Hao Chao*, Jakob M. Heinz, Celine Hoh, Alan Mao, Alaina Shumate, Mihaela Pertea, and Steven L. Salzberg* (2024). Combining DNA and protein alignments to improve genome annotation with LiftOn, bioRxiv, https://doi.org/10.1101/2024.05.16.593026
[Google Deep Dive 2024] Invited Google Deep Dive Talk 2024
Oral presentation at Google Health Deep Dive, Virtual & Mountain View, CA
[ISMB 2024] Intelligent Systems for Molecular Biology 2024
Oral presentation at Intelligent Systems for Molecular Biology (ISMB 2024), Montréal, Canada
[JHU 2024] JHU Joint Biostats-Genomics Lab Meeting 2024
20-min talk at JHU Joint Biostats-Genomics Lab Meeting (JHU 2024), Baltimore, MD
[RECOMB-Seq 2024] Research on Computational Molecular Biology on Biological Sequence Analysis 2024
Short talk at Research in Computational Molecular Biology Conference on Biological Sequence Analysis (RECOMB-Seq 2024), Cambridge, MA
[RECOMB 2024] Research on Computational Molecular Biology 2024
Poster at Research on Computational Molecular Biology (RECOMB 2024), Boston, MA
[GI 2023] Genome Informatics 2023
Poster at Genome Informatics (GI 2023), Cold Spring Harbor, New York
[ISMB/ECCB 2023] Intelligent Systems for Molecular Biology / European Conference on Computational Biology 2023
Poster at Intelligent Systems for Molecular Biology / European Conference on Computational Biology (ISMB/ECCB 2023), Lyon, France
[BDS 2022] Biological Data Science 2022
Poster at Biological Data Science (BDS 2022), Cold Spring Harbor, New York