Aug 2025: Friends, I’m thrilled to invite you to my public dissertation talk, “Decoding the Language of Genomes: Bridging Sequences and Function through Deep Learning” on August 25th. Hope to see you there!
Jul 2025: Our OpenSpliceAI paper is now live in eLife—an open‑source PyTorch framework for fast, modular splice‑site prediction, transfer learning, and variant‑effect scoring! Check out the GitHub and docs.
Jun 2025: Thrilled to share that the JHU Computer Science Department has spotlighted LiftOn—our new tool for accurate cross-species genome annotation transfer—in their news article: Solving the Bottleneck in Genome Biology.
Apr 2025: Honored to deliver my recipient talk for the Mark O. Robbins Prize at HPC 2025. It was a privilege to connect with fellow computing experts. Check out my Slides.
[RECOMB-Seq 2023] Research on Computational Molecular Biology on Biological Sequence Analysis 2023
April 14, 2023 - April 15, 2023
Istanbul, Türkiye
Research in Computational Molecular Biology Conference on Biological Sequence Analysis (RECOMB-Seq 2023)
30-min proceedings talk
Talk title: WGT: Tools and algorithms for recognizing, visualizing and generating Wheeler graphs
30-min Proceeding Paper Talk
I gave a talk on "WGT: Tools and algorithms for recognizing, visualizing and generating Wheeler graphs" at RECOMB-SEQ 2023 on 14$^{th}$ of April in Istanbul, Türkiye.
I’m presenting my Wheeler Graph recognizer, Wheelie, at RECOMB-SEQ 2023! Looking forward to reconnecting with friends and colleagues in İstanbul, Türkiye. Photo with Hopkins friends at RECOMB-SEQ 2023 in İstanbul, Türkiye.
