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Kuan-Hao Chao

Speaking

Talks & posters

Conference talks, invited lectures, and posters on machine learning for genomics.

  1. Decoding the Language of Genomes: Bridging Sequences and Function through Deep Learning

    [Academia Sinica 2026] ABRC Invited SeminarAgricultural Biotechnology Research Center, Academia Sinica· Tainan, TaiwanInvited talk

    SlidesEvent page
    Related resourcesHan1 · WGT · LiftOn · HG002 benchmark · Splam · OpenSpliceAI · Shorkie

    Han1

    PaperPublicationCodeDataPostResearch

    WGT

    PaperPublicationCodePostResearchReport

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

    HG002 benchmark

    PaperPublicationCodePostResearch

    Splam

    PaperPublicationCodeDocsPostResearch

    OpenSpliceAI

    PaperPublicationCodeDocsPostResearchReport

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  2. Predicting dynamic expression patterns in budding yeast with a fungal DNA language model

    [ProbGen 2026] Probabilistic Modeling in Genomics 2026University of California, Berkeley· Berkeley, CAInvited talk

    Slides
    Related resourcesShorkie

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  3. Decoding the Language of Genomes: Bridging Sequences and Function through Deep Learning

    Doctoral Dissertation Defense Seminar: "Decoding the Language of Genomes: Bridging Sequences and Function through Deep Learning"Johns Hopkins University· Baltimore, MDTalk

    SlidesDefense page
    Related resourcesDissertation · Han1 · WGT · LiftOn · Splam · OpenSpliceAI · Shorkie

    Dissertation

    PaperPublication

    Han1

    PaperPublicationCodeDataPostResearch

    WGT

    PaperPublicationCodePostResearchReport

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

    Splam

    PaperPublicationCodeDocsPostResearch

    OpenSpliceAI

    PaperPublicationCodeDocsPostResearchReport

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  4. Teaching machines to learn biology: splice site prediction and gene expression prediction

    [HPC 2025] JHU Symposium on High-Performance Computing 2025Johns Hopkins University· Baltimore, MDTalk

    Slides
    Related resourcesHan1 · LiftOn · Splam · OpenSpliceAI · Shorkie

    Han1

    PaperPublicationCodeDataPostResearch

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

    Splam

    PaperPublicationCodeDocsPostResearch

    OpenSpliceAI

    PaperPublicationCodeDocsPostResearchReport

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  7. Improving ChIP-exo DNA-binding and gene expression predictions with a multi-species fungi language model

    [Calico project showcase 2024] Calico summer internship talk 2024Calico Life Sciences· South San Francisco, CATalk

    Slides
    Related resourcesShorkie

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  8. Computational methods to improve genome annotation, splice site prediction, and gene expression prediction

    [Google Deep Dive 2024] Invited Google Deep Dive Talk 2024Google Health Deep Dive· Virtual & Mountain View, CAInvited talk

    Slides
    Related resourcesLiftOn · Splam · OpenSpliceAI · Shorkie

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

    Splam

    PaperPublicationCodeDocsPostResearch

    OpenSpliceAI

    PaperPublicationCodeDocsPostResearchReport

    Shorkie

    PaperPublicationCodeDocsDataPostResearchLatest slides

  9. Combining DNA and protein alignments to improve genome annotation with LiftOn

    [ISMB 2024] Intelligent Systems for Molecular Biology 2024Intelligent Systems for Molecular Biology (ISMB 2024)· Montréal, CanadaTalk

    SlidesVideo
    Related resourcesLiftOn

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

  10. Combining DNA and protein alignments to improve genome annotation with LiftOn

    [ISMB 2024] Intelligent Systems for Molecular Biology 2024Intelligent Systems for Molecular Biology (ISMB 2024)· Montréal, CanadaPoster

    Poster
    Related resourcesLiftOn

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

  12. Combining DNA and protein alignments to improve genome annotation with LiftOn

    [RECOMB 2024] Research on Computational Molecular Biology 2024Research on Computational Molecular Biology (RECOMB 2024)· Boston, MAPoster

    Poster
    Related resourcesLiftOn

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

  13. Combining DNA and protein alignments to improve genome annotation with LiftOn

    [RECOMB-Seq 2024] Research on Computational Molecular Biology on Biological Sequence Analysis 2024Research in Computational Molecular Biology Conference on Biological Sequence Analysis (RECOMB-Seq 2024)· Cambridge, MATalk

    Slides
    Related resourcesLiftOn

    LiftOn

    PaperPublicationCodeDocsPostResearchReport

  14. Splam: a deep-learning-based splice site predictor that improves spliced alignments

    [GI 2023] Genome Informatics 2023Genome Informatics (GI 2023)· Cold Spring Harbor, New YorkPoster

    Poster
    Related resourcesSplam

    Splam

    PaperPublicationCodeDocsPostResearch

  15. Splam: a deep-learning-based splice site predictor that improves spliced alignments

    [ISMB/ECCB 2023] Intelligent Systems for Molecular Biology / European Conference on Computational Biology 2023Intelligent Systems for Molecular Biology / European Conference on Computational Biology (ISMB/ECCB 2023)· Lyon, FrancePoster

    Poster
    Related resourcesSplam

    Splam

    PaperPublicationCodeDocsPostResearch

  16. The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual

    [ISMB/ECCB 2023] Intelligent Systems for Molecular Biology / European Conference on Computational Biology 2023Intelligent Systems for Molecular Biology / European Conference on Computational Biology (ISMB/ECCB 2023) — HiTSeq COSI highlight poster· Lyon, FrancePoster

    Poster
    Related resourcesHan1

    Han1

    PaperPublicationCodeDataPostResearch

  17. WGT: Tools and algorithms for recognizing, visualizing and generating Wheeler graphs

    [RECOMB 2023] Research on Computational Molecular Biology 2023Research in Computational Molecular Biology Conference (RECOMB 2023)· Istanbul, TürkiyePoster

    Poster
    Related resourcesWGT

    WGT

    PaperPublicationCodePostResearchReport

  18. WGT: Tools and algorithms for recognizing, visualizing and generating Wheeler graphs

    [RECOMB-Seq 2023] Research on Computational Molecular Biology on Biological Sequence Analysis 2023Research in Computational Molecular Biology Conference on Biological Sequence Analysis (RECOMB-Seq 2023)· Istanbul, TürkiyeTalk

    SlidesVideo
    Related resourcesWGT

    WGT

    PaperPublicationCodePostResearchReport

  19. The first gapless, reference-quality, fully annotated genome from a Southern Han Chinese individual

    [BDS 2022] Biological Data Science 2022Biological Data Science (BDS 2022)· Cold Spring Harbor, New YorkPoster

    PosterVideo
    Related resourcesHan1

    Han1

    PaperPublicationCodeDataPostResearch

  20. sangeranalyseR: simple and interactive processing of Sanger sequencing data in R

    [Bioc 2021] Bioconductor Conference 2021Bioconductor Conference 2021 (Bioc 2021)· VirtualPoster

    Poster
    Related resourcessangeranalyseR

    sangeranalyseR

    PaperPublicationCodeDocsPost

  21. RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

    [ICIBM 2019] International Conference on Intelligent Biology and Medicine 2019International Conference on Intelligent Biology and Medicine (ICIBM 2019)· Columbus, OhioTalk

    Slides
    Related resourcesRNASeqR

    RNASeqR

    PaperPublicationCodeDocs

  22. RNASeqR: an R package for automated two-group RNA-Seq analysis workflow

    [NTUCGM 2018] Summer Research Competition 2018NTU Centers of Genomics and Precision Medicine (NTUCGM) Summer Research· Taipei, TaiwanTalk

    Related resourcesRNASeqR

    RNASeqR

    PaperPublicationCodeDocs

  23. [WCIT 2017] Exhibition on smart transportation with Taipei City Government

    World Congress on Information Technology (WCIT 2017)· Taipei, TaiwanExhibition

    SlidesVideo