Honored to deliver my recipient talk for the Mark O. Robbins Prize at HPC 2025. It was a privilege to connect with fellow computing experts. Check out my Slides.
Mar 2025
Thrilled to release OpenSpliceAI – my new open‐source Pytorch splice site prediction framework! Check out the preprint, GitHub, DocsSlides, or join the convo on bluesky.
Excited to share my work on a Multi-Species Fungal Language Model that improves ChIP-exo and RNA-Seq coverage predictions in JHU joint lab meeting. Check my video, slides.
I am presenting my splice site predictor, Splam and OpenSpliceAI at Biological Data Science 2024. See you in Cold Spring Harbor, NY!
Sep 2024
My splice site predictor, Splam, is published in the journal Genome Biology.
Sep 2024
JHU CS department wrote an article announcing my receipt of 2024 Mark O. Robbins Prize in High-Performance Computing 🎉
Aug 2024
Wrapping up my Calico internship with a 1-hour talk! Check out my slides. Thanks to all the great mentors, collaborators, and good friends in Kelley Lab!
Check out my talk on “Combining DNA and protein alignments to improve genome annotation with LiftOn”. Video and slides are available now!
Jun 2024
Honored to receive the 2024 Mark O. Robbins Prize in High-Performance Computing. Huge thanks to my advisors, collaborators, and friends. Stay tuned for my talk at the 2025 ARCH Symposium!
May 2024
Excited to share that I’ll be joining the Kelley Lab at Calico for the 2024 summer internship! Connect with me in South San Francisco, CA!
May 2024
Check out my talk on “Predicting splice sites in DNA sequences with sequence models”. Video and slides are available now!
May 2024
LiftOn is selected for a 20-min talk at the ISMB 2024,General Computational COSI track. Preprint is available. See you in Montreal, Canada!
LiftOn, my new genome lift-over tool, is selected as a talk at RECOMB-Seq 2024. Friends, see you in Boston, MA – preprint coming soon!
Jan 2024
My research collaboration with Berkeley EECS is highlighted by JHU Whiting School of Enigneering and JHU CS Department. Explore our work on the Wheeler graph index with Pei-Wei Chen, Ben Langmead and and Sanjit Seshia.
Thrilled to announce I’ve passed my Graduate Board Oral Exam! Huge thanks to Steven Salzberg, Mihaela Pertea, Ben Langmead, Liliana Florea, and Winston Timp for their invaluable service on my GBO committee.
Nov 2023
My co-authored paper introduces EASTR, a software tool designed to identify and eliminate inaccurately spliced alignment, has been published in Nature Communications!
Oct 2023
The paper I coauthored, CHESS 3, decribing a new human gene catalog, is now published in Genome Biology!
Aug 2023
My paper in iScience describes the fastest Wheeler graph recognition algorithm using renaming heuristics and SMT solver. See the WGT paper, check out GitHub and watch my RECOMB-Seq talk!
Jul 2023
I am thrilled to release Splam v1.0.2, a splice site predictor that enhances spliced alignments. Check out the Splam GitHub, preprint and documentation!
Jun 2023
My co-first author paper on analyzing protein interactome using co-elution data is published in Briefing in Bioinformatics. Great collaboration with HK Tsai Lab and Jun-Yi Leu Lab! See the paper here
May 2023
Splam is accepted as a poster at MLCSB COSI, and Han1 is accepted as a highlight poster at HiTSeq COSI. Exciting to share our work at ISMB/ECCB 2023 in Lyon, France
Mar 2023
My paper WGT is accepted to RECOMB-Seq as a proceedings track paper and RECOMB as a poster. Great collaboration with langmead lab and Seshia lab. See you in İstanbul, Türkiye
Jan 2023
My paper in G3: Genes, Genomes, Genetics describes the first gap-free assembly of a Han Chinese human, Han1. See the paper here
My paper in Genome Biology and Evolution describes a new open source R package for processing Sanger sequencing data. See the paper here. It is available on Bioconductor.