My paper in iScience describes the fastest Wheeler graph recognition algorithm using renaming heuristics and SMT solver. See the WGT paper, check out GitHub and watch my RECOMB-Seq talk!
Jul 2023
I am thrilled to release Splam v1.0.2, a splice site predictor that enhances spliced alignments. Check out the Splam GitHub, preprint and documentation!
Jun 2023
My co-first author paper on analyzing protein interactome using co-elution data is published in Briefing in Bioinformatics. Great collaboration with HK Tsai Lab and Jun-Yi Leu Lab! See the paper here
May 2023
Splam is accepted as a poster at MLCSB COSI, and Han1 is accepted as a highlight poster at HiTSeq COSI. Exciting to share our work at ISMB/ECCB 2023 in Lyon, France
Mar 2023
My paper WGT is accepted to RECOMB-Seq as a proceedings track paper and RECOMB as a poster. Great collaboration with langmead lab and Seshia lab. See you in İstanbul, Türkiye
Jan 2023
My paper in G3: Genes, Genomes, Genetics describes the first gap-free assembly of a Han Chinese human, Han1. See the paper here
My paper in Genome Biology and Evolution describes a new open source R package for processing Sanger sequencing data. See the paper here. It is available on Bioconductor.