Contact¶
Bugs, questions and feature requests¶
Open a GitHub issue — that is the fastest route and it leaves an answer other people can find.
Please include:
- The exact command or code that fails, small enough to run.
- The full traceback, not just the last line.
gffbase.__version__, and whethergffbase.native_available()isTrue.- Your Python version and platform.
- Which annotation it happened on, and ideally a few lines that reproduce it.
For anything data-shaped, the smallest GFF3 that reproduces the problem is worth more than a description of the file. A handful of lines is usually enough.
import gffbase, sys
print(gffbase.__version__, gffbase.native_available(), sys.version, sys.platform)
Security¶
Please do not open a public issue for a vulnerability. The reporting process, the supported versions and what is in scope are in the security policy.
Author¶
Kuan-Hao Chao — kuanhao.chao@gmail.com · khchao.com · ORCID 0000-0003-3026-4266
Contributing¶
Pull requests are welcome. CONTRIBUTING.md covers the
development setup, the test suite, and what a reviewable PR looks like.
Other tools¶
| Tool | What it does |
|---|---|
| LiftOn | Accurate annotation lift-over combining DNA and protein alignment |
| OpenSpliceAI | An open, retrainable reimplementation of SpliceAI |
| Splam | Splice-junction recognition and alignment cleanup |
| Shorkie | Sequence-to-expression modelling in budding yeast |