Contact¶
Bugs, questions and feature requests¶
Open a GitHub issue — that is the fastest route and it leaves an answer other people can find.
Please include:
The exact command or code that fails, small enough to run.
The full traceback, not just the last line.
gffbase.__version__, and whethergffbase.native_available()isTrue.Your Python version and platform.
Which annotation it happened on, and ideally a few lines that reproduce it.
For anything data-shaped, the smallest GFF3 that reproduces the problem is worth more than a description of the file. A handful of lines is usually enough.
import gffbase, sys
print(gffbase.__version__, gffbase.native_available(), sys.version, sys.platform)
Security¶
Please do not open a public issue for a vulnerability. The reporting process, the supported versions and what is in scope are in the security policy.
Contributing¶
Pull requests are welcome. CONTRIBUTING.md covers the development setup, the test suite, and what a reviewable PR looks like.
Other tools¶
Tool |
What it does |
|---|---|
Accurate annotation lift-over combining DNA and protein alignment |
|
An open, retrainable reimplementation of SpliceAI |
|
Splice-junction recognition and alignment cleanup |
|
Sequence-to-expression modelling in budding yeast |