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    Kuan-Hao Chao

    KH Chao

    Sr. Deep Learning Scientist, Illumina

    NEWS

    Sep 2025: I’m excited to share our new preprint on Shorkie—a semi-supervised framework that predicts RNA-seq coverage from DNA sequence in S. cerevisiae.

    Aug 2025: Excited to announce I’ve joined Illumina Artificial Intelligence Lab as a Senior Deep Learning Scientist & Engineer.

    Aug 2025: Heart full—I defended my PhD at Johns Hopkins on August 25, 2025. I’m deeply thankful to my advisors, Steven Salzberg & Mihaela Pertea; my committee—Ben Langmead, David Kelley, and Anqi Liu; labmates, friends, and family—for your unwavering support.

    Aug 2025: Friends, I’m thrilled to invite you to my public dissertation talk, “Decoding the Language of Genomes: Bridging Sequences and Function through Deep Learning” on August 25th. Hope to see you there!

    Jul 2025: Our OpenSpliceAI paper is now live in eLife—an open‑source PyTorch framework for fast, modular splice‑site prediction, transfer learning, and variant‑effect scoring! Check out the GitHub and docs.

    Jun 2025: Thrilled to share that the JHU Computer Science Department has spotlighted LiftOn—our new tool for accurate cross-species genome annotation transfer—in their news article: Solving the Bottleneck in Genome Biology.


    >> Full list of NEWS


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